nufeb_tools
Description
Python-based tools and utilities for NUFEB simulations
Getting Started
Install via pip:
pip install nufeb-tools
Generate NUFEB simulations from the CLI:
nufeb-seed
Remove old runs:
nufeb-clean
Get data from a simulation for analysis
from nufeb_tools import utils
x = utils.get_data(test=True)
Plot the overall growth
from nufeb_tools import plot
import matplotlib.pyplot as plt
f, ax = plt.subplots()
plot.overall_growth(x.biomass,ax=ax)
Plot colonies based on initial seed cells
from nufeb_tools import utils, plot
import matplotlib.pyplot as plt
x = utils.get_data(directory=r'E:\sucrose\runs\Run_50_50_1.00e+00_1_2022-01-11_48525')
f,ax = plt.subplots()
plot.colony(x,25900,colors,ax=ax)
plt.show()