nufeb_tools
latest
Notes
nufeb_tools
License
Package Content
Atom Generation
NUFEB Simulation Analysis
Examples
Notebooks
nufeb_tools
»
Index
Edit on GitHub
Index
A
|
B
|
C
|
D
|
F
|
G
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
W
A
Atom() (nufeb_tools.generate_atom_dev.Cell method)
,
[1]
average_nutrients() (in module nufeb_tools.plot)
,
[1]
avg_con (nufeb_tools.utils.get_data attribute)
,
[1]
B
Bacillus() (nufeb_tools.generate_atom_dev.Cell method)
,
[1]
biomass (nufeb_tools.utils.get_data attribute)
,
[1]
biomass_time() (in module nufeb_tools.plot)
,
[1]
C
calc_biomass() (nufeb_tools.utils.get_data method)
,
[1]
Cell (class in nufeb_tools.generate_atom_dev)
,
[1]
Check() (nufeb_tools.generate_atom_dev.Cell method)
,
[1]
(nufeb_tools.generate_atom_dev.Culture method)
,
[1]
clean() (in module nufeb_tools.generate_atom)
,
[1]
(in module nufeb_tools.generate_atom_dev)
collect_fitness() (nufeb_tools.utils.get_data method)
,
[1]
collect_positions() (nufeb_tools.utils.get_data method)
,
[1]
colony() (in module nufeb_tools.plot)
,
[1]
colorFaderRGB() (in module nufeb_tools.plot)
convert_units_avg_con() (nufeb_tools.utils.get_data method)
,
[1]
convert_units_biomass() (nufeb_tools.utils.get_data method)
,
[1]
count_colony_area() (nufeb_tools.utils.get_data method)
,
[1]
Culture (class in nufeb_tools.generate_atom_dev)
,
[1]
D
dims (nufeb_tools.utils.get_data attribute)
,
[1]
directory (nufeb_tools.utils.get_data attribute)
,
[1]
download_test_data() (in module nufeb_tools.utils)
F
fitness_metrics() (in module nufeb_tools.spatial)
,
[1]
G
get_colony_areas() (nufeb_tools.utils.get_data method)
,
[1]
get_data (class in nufeb_tools.utils)
,
[1]
get_fitness() (nufeb_tools.utils.get_data method)
,
[1]
get_grid_idx() (in module nufeb_tools.utils)
get_growth_intervals() (in module nufeb_tools.plot)
get_local_con() (nufeb_tools.utils.get_data method)
,
[1]
get_local_data() (nufeb_tools.utils.get_data method)
,
[1]
get_mothers() (nufeb_tools.utils.get_data method)
,
[1]
get_mothers__old() (nufeb_tools.utils.get_data method)
,
[1]
get_neighbor_distance() (nufeb_tools.utils.get_data method)
,
[1]
get_neighbors() (nufeb_tools.utils.get_data method)
,
[1]
get_nutrient_grid() (nufeb_tools.utils.get_data method)
,
[1]
growth_curve_panel() (in module nufeb_tools.plot)
growth_rate_div() (in module nufeb_tools.plot)
,
[1]
growth_rate_mu() (in module nufeb_tools.plot)
growth_rate_time() (in module nufeb_tools.plot)
,
[1]
M
main() (in module nufeb_tools.generate_atom)
,
[1]
(in module nufeb_tools.generate_atom_dev)
,
[1]
(in module nufeb_tools.whole_culture_growth_curves)
module
nufeb_tools
nufeb_tools.generate_atom
,
[1]
nufeb_tools.generate_atom_dev
,
[1]
nufeb_tools.plot
nufeb_tools.spatial
nufeb_tools.templates
nufeb_tools.utils
nufeb_tools.whole_culture_growth_curves
N
ntypes (nufeb_tools.utils.get_data attribute)
,
[1]
nufeb_tools
module
nufeb_tools.generate_atom
module
,
[1]
nufeb_tools.generate_atom_dev
module
,
[1]
nufeb_tools.plot
module
nufeb_tools.spatial
module
nufeb_tools.templates
module
nufeb_tools.utils
module
nufeb_tools.whole_culture_growth_curves
module
numsteps (nufeb_tools.utils.get_data attribute)
,
[1]
Nutrient (class in nufeb_tools.generate_atom_dev)
,
[1]
O
overall_growth() (in module nufeb_tools.plot)
,
[1]
P
parse_args() (in module nufeb_tools.generate_atom)
,
[1]
(in module nufeb_tools.generate_atom_dev)
,
[1]
(in module nufeb_tools.whole_culture_growth_curves)
positions (nufeb_tools.utils.get_data attribute)
,
[1]
R
Report() (nufeb_tools.generate_atom_dev.Cell method)
,
[1]
rotate() (nufeb_tools.generate_atom_dev.Cell method)
,
[1]
run() (in module nufeb_tools.generate_atom)
,
[1]
(in module nufeb_tools.generate_atom_dev)
,
[1]
(in module nufeb_tools.whole_culture_growth_curves)
S
setup_logging() (in module nufeb_tools.generate_atom)
,
[1]
(in module nufeb_tools.generate_atom_dev)
,
[1]
SucRatio (nufeb_tools.utils.get_data attribute)
,
[1]
T
test (nufeb_tools.utils.get_data attribute)
,
[1]
timepoints (nufeb_tools.utils.get_data attribute)
,
[1]
timestep (nufeb_tools.utils.get_data attribute)
,
[1]
W
whole_culture_growth_curves() (in module nufeb_tools.whole_culture_growth_curves)
Read the Docs
v: latest
Versions
latest
stable
Downloads
pdf
On Read the Docs
Project Home
Builds